PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016480947.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 153aa    MW: 17284.2 Da    PI: 5.0563
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016480947.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-052749123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C++ Fs+   L  H++ H
  XP_016480947.1 27 YRCSFCNRGFSNAQALGGHMNIH 49
                    9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.57E-72453No hitNo description
Gene3DG3DSA:3.30.160.604.8E-52453IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00252749IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.782754IPR007087Zinc finger, C2H2
PROSITE patternPS0002802949IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MGSDLNSSNF EITWKSDELG LSQAKFYRCS FCNRGFSNAQ ALGGHMNIHR KDRAKLREVP  60
SEISSDDTSS PSKRPCEEHH HYHPISKAKD NDELIIRGDI LQLPLFVDFP SKEVINCVET  120
QEGNKGMQLS DDSELDLELR LGPEPPESSM KSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009606984.11e-111PREDICTED: transcriptional regulator TAC1-like
RefseqXP_016480947.11e-111PREDICTED: transcriptional regulator TAC1-like
TrEMBLM1AH568e-49M1AH56_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000227402e-48(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74631626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.13e-17C2H2 family protein